Showing posts with label Biology. Show all posts
Showing posts with label Biology. Show all posts

Thursday, 20 May 2021

Charlotte Mason Highschool Update (May 2021)

 I tend to only do a year end exam but we're using this week as an exam week as we've finished Term 1 of Ambleside Online Year 11. Being Year 11 and covering the 20th century, there are a lot of things happening over short periods of time so having a break to reflect and look back over what we've covered so far seemed like a wise thing to do.

I've made a few changes to the AO schedule like I always do but we're following the general outline, adding in some Australian content, dropping some of the American focused titles, as well as using some books we already had in place of books that were scheduled and we didn't have. I generally post what we've used at the end of the year's work but I'll also highlight bits and pieces as the year progresses.

Nature and Science Notebooks



A simple experiment for illustrating osmosis that only uses a potato, salt and water.


Experiment with a homemade Calorimeter


We used the instructions here to make the calorimeter and do the experiment.

 




Enjoying the sunshine while drawing & listening to me read James Herriot and Charlotte Mason's 'Ourselves'



Current Events/Culture

I like to listen to John Anderson's Conversation Podcasts from time to time. This conversation with Matt Taibbi was very good so I played it on YouTube and we watched it today. I'd never heard of Taibbi before but he has a fascinating background - a journalist who has lived in Soviet Russia, played basketball in Mongolia and who is very articulate. I like John Anderson's style of interviewing - respectful and thoughtful. He interviews people with a wide range of views and is a good listener who asks intelligent questions. In this interview they discuss the state of journalism in the West & Taibbi gives some good advice to young people who want to pursue journalism. 

*Update: I shared this interview with one of my sons who's into politics etc. and he commented that Taibbi's had an odd journey to where he is now & he wouldn't exactly call him a role model. As I said I didn't know a thing about him and just took the interview at face value. I did a little searching and it looks like his former views have changed somewhat. Anyhow, I thought this interview was well done and very topical.



Some favourite free read books so far this year

Black Orchids by Rex Stout
The Silent Speaker by Rex Stout

The Virgin in the Ice by Ellis Peters
The Holy Thief by Ellis Peters

Green Dolphin Country by Elizabeth Goudge







Wednesday, 1 April 2020

The Island of Doctor Moreau by H.G. Wells (1896)



In January of 1888, a brig sailing between Samoa and California, discovered a man floating alone in a small open boat and rescued him. The man was Edward Prendick. Eleven months earlier he had been on a ship which collided with a derelict vessel and he was thought to have drowned. The tale he told his rescuers was so strange that they believed the solitude and danger he went through had made him mad.
His tale was thus:

After the collision he managed to climb onto a dinghy and some days later a schooner carrying a menagerie of savage beasts chanced to pick him up.
Montgomery, a man with a scientific background, was on board and he had been collecting animals to take back to an uncharted island in the Pacific where he worked with Dr Moreau, a scientist engaged in vivisection and bizarre experiments.
After an incident with the drunken captain, Prendick was evicted from the ship and stranded on the island when Montgomery disembarked. Moreau and Montgomery reluctantly allowed Prendick onto the island as his only other option was to drift in the ocean in an unseaworthy boat until he succumbed to the elements.
Bit by bit the secrets of this island began to reveal themselves. Moreau was breaking the laws of nature by experimenting with vivisection, blending one animal with another, and had created the strange ‘Beast People.’

‘Scarcely six weeks passed before I had lost every feeling but dislike and abhorrence for these infamous experiments of Moreau’s. My one idea was to get away from these horrible caricatures of my Maker’s image, back to the sweet and wholesome intercourse of men.’

Augustin Filon, a contemporary reviewer of the book, said that Moreau’s ‘...absurd and sublime dream is that of condensing the innumerable slow stages of evolution into a few weeks or months.’

However, one of Moreau’s victims escapes from his laboratory and attacks the scientist. The taste of blood causes the creature to relapse and incites the rest of the ‘Beast Creatures’ to similar behaviour. As they start to revert to their former animal states the island becomes a very dangerous place to be.

The Island of Doctor Moreau is a work of science fiction but it raises ethical questions that are relevant for today. In the pursuit of scientific knowledge and advancement, what ethical dilemmas should be considered beforehand? Even though we have the capabilities to push biological boundaries, how far should we allow ourselves to go?
This is an interesting book and H.G. Wells was a superb writer. I think it would be a good book for biology students to read & discuss but some sensitive souls may want to give it a miss.



Linking to Back to the Classics: An Abandoned Classic. I started reading this a few years ago but I wasn't in the mood for it then. As much as I enjoy this author's literary gift, his subjects are often a tad depressing!



Thursday, 6 July 2017

The Immortal Life of Henrietta Lacks by Rebecca Skloot




For many years scientists had been trying to grow human cells outside of the human body in order to have a continuous (immortal) line of cells that would constantly replenish and that could be used to study any number of things,  especially viruses. Mouse cells had been cultured successfully, but every attempt to culture human cells had failed.
That was, up until 1951. That year, Henrietta Lacks, a 30 year old black mother of five young children, was admitted to the coloured ward of John Hopkins Hospital to have a biopsy of her cervix. A sample of tissue from her cervix was sent to George Gey, the head of tissue culture research at Hopkins.
At that time, if doctors wanted to use tissue from patients for purely research purposes, patient consent was not required, although it is now.
Henrietta Lack's tumour cells were put into culture and they didn't merely survive, but grew like nothing else had before.
The tumour turned out to be a very aggressive form of cervical cancer, and before long, millions of the cells had reproduced themselves in the laboratory. Gey and his assistants had grown the first immortal human cells which they named 'HeLa,' for Henrietta and Lacks. These cells became one of the most important tools in medicine and have been used in the development of the polio vaccine, in gene mapping, cloning, cancer research, and researching the effects of zero gravity and radiation on the human body.

The Immortal Life of Henrietta Lacks is a real page turner of a book and quite fascinating generally.
Rebecca Skloot is a journalist, which partly explains the readability of her book, and also the style in which she writes the story. To me this was both positive and negative. Positive, in that the scientific concepts were explained well enough for a lay person to understand and in a narrative style; negative, where the author injected certain incidents, such as the abuse of Henrietta's children by family members after she died, and other intimate family details, throughout the book.
I wondered whether this was really necessary, but an important aspect of this book is the recognition that behind all the science and research, there are real people. The author certainly portrayed this well.

I'm not American, so I didn't come to this book with any personal background experience of USA race relationships or much knowledge of the history and implications of segregation, therefore my reactions to this book are as an outsider looking in.
I had the impression at times that the culture of Henrietta Lacks' cells and the subsequent profits derived from their use (that the family never benefited from) was blamed for everything that went wrong with the Lacks family afterwards, but there was some serious dysfunction in the family before Henrietta ever went to hospital.
It was tragic that five young children lost their mother, but she had fairly advanced cervical cancer by the time she presented to John Hopkins' Hospital, and the treatment of cervical cancer wasn't clear cut at the time. She had the standard treatment of the time: radium and X-ray therapy. (See my comments on Cancer Ward, set in the 1950's.)
The author reveals scientific research that went beyond the bounds of decency, although not in Henrietta's case: research using cancer cells perpetrated upon unsuspecting black patients (see the infamous Tuskegee Study) that were likened to the Nazi experiments of WWII. Prison inmates were used as human guinea pigs, and the conditions of the 'Negro' mental institution where Henrietta's eldest girl was sent before her mother died were disgusting. Were other mental institutions at the time any better? I don't know.

There were also privacy concerns raised by the family. Henrietta's medical records were released without their consent, and blood was taken from various family members for research purposes without full disclosure. In fact, the family had no idea what was happening.

Henrietta's family were uneducated and ignorant of science so when they found out that her cells were 'alive' it was very confusing for them and this misunderstanding caused them a lot of unnecessary anguish. They thought that parts of her were still alive and that she could feel pain when experiments were performed on her cells.
The family also wondered, if Henrietta had been so important to medicine and scientists were buying her cells, why couldn't the family afford health insurance?
This is one of those areas where science leapt ahead before the ethics had been worked out. And this still happens.
The author included a very informative afterword that addresses tissue research and patient rights at the time the book was first printed in 2009, and gives examples of other individuals who took action against medical practitioners who profited by the sale of their patients tissues.
Fascinating!
Cell research is vital. It needs to be done ethically and in an informed manner, but what a huge can of worms we've opened up!

Some other thoughts:

Henrietta Lacks was an uneducated woman from an impoverished background and like most black patients at the time, she only went to hospital when she thought had no other choice. As I mentioned above, there had been some very unethical research conducted at the Tuskegee Institute, and other incidents, that generated suspicion of the medical profession amongst black communities.

Many doctors back then used public patients for research, generally without their knowledge - these patients were being treated for free so it was considered fair enough to use them as research subjects.

In the 1950's "benevolent deception" was commonly practiced and so it was not uncommon for patients to have no idea of their diagnosis, especially if it was something as distressing as cancer. This was also the practice in the USSR in the book I mentioned above.

Henrietta was not told that her cells were replicating themselves in a laboratory and her family only found out inadvertently about twenty years later. By this time HeLa cells were a huge business and were sold and sent all over the world.

When the family realised that people were making money out of their mother's cells, they became angry, especially when they couldn't even afford medical insurance.

At the time this book went to press, blood samples and body bits taken during procedures such as removal of moles, ovaries, appendices, and tonsils - which are given voluntarily - are often kept indefinitely and later used to develop things like vaccines and drugs and no permission is required.

Rebecca Skloot first heard about HeLa cells when she was sixteen and doing a community college biology class. She spent a decade researching Henrietta's background including time spent getting to know Deborah Lacks, Henrietta's daughter, who helped provide much of the information for the book.

The documentary below, The Way of all Flesh was filmed in 1998 and is a very interesting account of the science behind the HeLa cells:





I read somewhere that a version for younger readers was published in 2012: The Immortal Life of Henrietta Lacks: The Young Reader's Edition by Gregory Mone, Rebecca Skloot, 256 Pages, Published in 2012, but it looks like it's out of print.



Sunday, 9 October 2016

The Double Helix: A Personal Account of the Discovery of the Structure of DNA by James D. Watson


In 1953, Francis Crick and James Watson (who was only 24 years of age at the time) presented a scientific paper that proposed the double helical structure of DNA. Up until about 1944, DNA had been ignored and was considered to be 'the stupid molecule.' It was so simple, that it couldn't possibly play any major part in the body.
With the discovery of the double helix formation, the replication of genes and their role in the transmission of information from parents to their offspring became obvious. This discovery was a major turning point in science and the beginning of modern genetics.




The Double Helix, first published in 1968, is an honest, humorous, chatty, and at times sarcastic, first-hand account by James Watson of his version of how DNA was discovered. An American, he moved to Cambridge University in 1951 after studying in the USA and Copenhagen. It was at Cambridge that he met Francis Crick, who, like himself, was interested in how genes were constructed and the role of DNA, and together they made the discovery that revolutionised biochemistry.
James Watson has written a unique book in many respects. This is the inside story - a glimpse into the rivalries, the insecurities and the ambitions of scientists; their struggles, triumphs and disappointments. Watson didn't hold back on his opinions and at times he was crude and unkind to his fellow scientists, but his honesty in portraying the attitudes and eccentricities of the scientific community was a refreshing approach.
I was impressed with the positive reactions from the various scientists when Crick and Watson's discovery became known. Previous rivals and runners in the race were genuinely thrilled with the news and recognised its huge impact for the development of science.
This is a good read for anyone interested in science and genetics. It does get a little technical in places but not enough that you'd miss the gist of the story, although a good grasp of chemistry would definitely help. Watson gets sidetracked at times with comments on pretty girls, parties and random misogynist observations so I'd recommend a pre-read if you're thinking of using it in high school.

'I have never seen Francis Crick in a modest mood...'

'...there existed an unspoken yet real fear of Crick, especially among his contemporaries who had yet to establish their reputations. The quick manner in which he seized their facts and tried to reduce them to coherent patterns frequently made his friends' stomachs sink with the apprehension that, all too often in the near future, he would succeed, and expose to the world the fuzziness of minds hidden from direct view by the considerate, well-spoken manners of the Cambridge colleges.'

'One could not be a successful scientist without realizing that, in contrast to the popular conception supported by newspapers and mothers of scientists, a goodly number of scientists are not only narrow-minded and dull, but also just stupid.'






Sunday, 29 November 2015

Highschool Biology with Living Books: Mr Tompkins Inside Himself...




Mr Tompkins Inside Himself  by George Gamow & Martynas Ycas
274 pages
Illustrated with black pen drawings
1967 edition

This book has been part of Benj's Science this term. He's also been working through Understanding Physics by Isaac Asimov this year, which he really enjoys. He wasn't keen on doing any more Biology but I thought this book by Gamow would be an interesting and slightly different way of approaching the subject. The author contributed to the development of the Big Bang Theory and that belief is reflected in his writing. Working through selected chapters of Apologia Biology prior to reading this book helped to balance things out.

There are ten chapters to the book and he has read through a chapter per week, except Chapter 6, which he skipped. I read through the first six chapters and flicked through the rest and got together a few extra resources for interest's sake, which I include below. Gamow aquired world-wide fame as the author of scientific books and articles written for the layman, and even a cursory reading of this book helped me understand why. Benj has actually enjoyed this book after his initial reluctance, probably because Gamow has a quirky sense of humour and makes many diversions, and, being a physicist, he often diverts in that direction.




Mr. Tompkins is a teller at a city bank who likes to spend his leisure time relaxing with a book or magazine on popular science. Despite his intense interest in cosmology, atoms, and other scientific topics, he frequently nods off in the middle of his reading. As he sleeps, his vivid imagination takes over and leads him into fantastic worlds where his dreams are often strange and grotesque, but help him grasp the meaning of what he's read.


Chapter 1 - Through the Blood Stream

Cell colonies, erythrocytes, amino acids, leucocytes

Truth and beauty in the cell...




Cancer - aggressive cells




Chapter 2 - Muscle Beach

ATP actomysin, myofibrils, nerve gas, muscle fibres - contraction
The history and action of nerve agents (nerve gas).

Contents of video below:

Smooth, Cardiac, and Skeletal Muscles Create Movement 1:18
Sliding Filament Model 4:52
Skeletal Muscles Are Made of Bundles of Protein Fibers 2:40
Actin and Myosin Myofilaments 3:54
Calcium and ATP Cause the Binding and Unbinding 5:05






Chapter 3 - The Heart on the Wrong Side

Situs inversus - causes, symptoms, treatment

Topology

Möbius Strip - Benj watched this video and made one and then gave it to his sister to see what she thought of it.


 Ants on a Mobius Strip by M.C. Escher


Sola & Korob  or Scylla & Charybdis, (from Homer's Odyssey) the choice between two evils. Pg 71

Levo & dextro - this is to do with organic chemistry.


Chapter 4 - Gene's Piece of Mind

Chromosomes
Mutations, deformity & disease - Creation Science

Radiation sickness, alcohol - alcohol is a diuretic as are coffee & tea.
Antioxidants.


Chapter 5 - The Number of the Beast

Benj has covered much of this in Understanding Physics but Gamov adds some humour and spark to this area with Mr Tompkins' adventures.


Molecular biology
Wavelengths, light - physics
X Rays
Trigonometry

Flatland: A Romance of Many Dimensions by Edwin A. Abbot, is a book of mathematical fiction that Gamow mentions in this chapter. It was written in 1885 and describes a world of two dimensions. It's online at Gutenberg but I don't know anything else about it.

Double helix - James Watson: 'How We Discovered DNA' - a TED video just over 20 minutes long. Watson mentions Gamow in this video and there is a transcript you can click on to decide if it would be suitable for your student. Some mild language.
Towards the end, Watson talks about what fires him up these days - DNA biopsies to detect diseases  such as breast cancer before it becomes cancer; the loss of pieces of gene/molecules and its association with autism. Very interesting ideas.

Origin of Life -  an explanation of what is needed for abiogenseis by Don Batten of Creation Ministries. Includes an animation on protein synthesis.

There's a lot of information in the video below, presented very rapidly, but well done. It's almost 13 minutes long, but I'd suggest stopping around the 9 min 20 sec mark. There's a rude teenage boy joke just after that, but it also gets more technical. You'll cover Nucleic Acid, DNA, RNA & Replication in that time - which was what the chapter was mostly about. I don't remember any evolutionary material in the segment I watched.





Brownian motion (pg 127) - the random movement of particles suspended in a fluid.


Chapter 6 - An Ocean Voyage

Benj skipped this chapter. It's mostly Darwinian evolution although there are a couple of interesting digressions. Benj had already worked through some of the Apologia Biology text which covered a lot of this. The chapters in Mr Tompkins can be read independently of one another without posing a problem.
Would Darwin be a Darwinist today?


Chapter 7 - The Clock Ticks

Biological clocks in animals & humans.
Sleep & health issues;
Circadian rythym - more than you'll ever need to know.


Chapter 8 - The Maniac

Binary numbers, computers


Introduction to number systems and binary:




Nerve synapses - neurotransmitters.
Right and Left brain hemispheres - what's the difference?
Brain function & injury - progresses through the different parts of the brain, their various functions,  and what happens when those parts are injured.


Chapter 9 - Brainy Stuff

Computers and brains; quite a bit of evolutionary content in this chapter.
brain vs computer


Chapter 10 - The Lake of Dreams

Mr Tompkins talks with his son, Wilfred, who is a scientist, about biology - past, present and future.

Entropy
Vis vitalis - 'an organising force of life, which opposes the tendency to disorder of inorganic materials.'
According to this article, in 1950 vis vitalis 'was sanctioned by Stalin and led the Soviet biological sciences into a blind alley.'


Other resources:

Why I Teach my Kids Evolution

If only Charles Darwin could see his descendant now - Faith reanimated through intellectual pursuit.